The First International Workshop on Bioinformatics

Research Article

Robust Functional Profile Identification for DSC Thermograms

  • @INPROCEEDINGS{10.4108/eai.3-12-2015.2262549,
        author={Amy Kwon and Dianxu Ren and Ming Ouyang and Nichola Garbett},
        title={Robust Functional Profile Identification for DSC Thermograms},
        proceedings={The First International Workshop on Bioinformatics},
        publisher={ACM},
        proceedings_a={BIOINFORMATICS},
        year={2016},
        month={5},
        keywords={functional data depth functional pca bootstrap thermograms},
        doi={10.4108/eai.3-12-2015.2262549}
    }
    
  • Amy Kwon
    Dianxu Ren
    Ming Ouyang
    Nichola Garbett
    Year: 2016
    Robust Functional Profile Identification for DSC Thermograms
    BIOINFORMATICS
    ACM
    DOI: 10.4108/eai.3-12-2015.2262549
Amy Kwon1,*, Dianxu Ren2, Ming Ouyang3, Nichola Garbett4
  • 1: Seoul National University
  • 2: University of Pittsburgh
  • 3: University of Massachusetts Boston
  • 4: University of Louisville
*Contact email: amykwonus@gmail.com

Abstract

Differential scanning calorimetry is an emerging technique with an attempt to characterize a subject's disease status according to heat capacity profiles, which are called thermograms. However, thermograms exhibit large shape variations, and the sample size is typically small. Therefore, it is important to extract robust characterization of thermograms representing the clinical status for further study. The current study identifies the representative heat capacity profiles from functional principle components which are derived from the bootstrap distribution of the deepest heat capacity function according to the functional data depth, instead of the original thermogram data set. 71 thermograms are obtained from two groups (healthy, cervical carcinoma), and functional PCA are conducted with the original thermogram data set and the bootstrap data set of the deepest heat capacity functions. Examining the first three PCs of the two groups between the two data sets, the bootstrap data set shows more distinctive difference in modes of variation between the two groups in comparison with the original thermogram data set, and the representative heat profiles are reconstructed with the PCs which are derived from the bootstrap sample sets. 90% confidence intervals of the representative heat profiles can be directly obtained from the same bootstrap set.