Research Article
A New Approach to Computing Equilibrium State of Combinatorial Hybridization Reaction Systems
@INPROCEEDINGS{10.4108/ICST.BIONETICS2007.2376, author={Satoshi Kobayashi}, title={A New Approach to Computing Equilibrium State of Combinatorial Hybridization Reaction Systems}, proceedings={1st International ICST Workshop on Computing and Communications from Biological Systems: Theory and Applications}, proceedings_a={CCBS}, year={2008}, month={8}, keywords={DNA RNA convex programming equilibrium hypergraphs molecular computing secondary structure symmetry tile assembly}, doi={10.4108/ICST.BIONETICS2007.2376} }- Satoshi Kobayashi
Year: 2008
A New Approach to Computing Equilibrium State of Combinatorial Hybridization Reaction Systems
CCBS
IEEE
DOI: 10.4108/ICST.BIONETICS2007.2376
Abstract
This paper provides a new approach to the efficient analysis of equilibrium state of a combinatorial Hybridization Reaction System (HRS, for short) in which exponentially many assemblies of molecules are generated from a set of molecules. The proposed framewok provides a method to overcome the combinatorial explosion problem of resultant assemblies. The key idea exists in the locality of HRSs. The goal of this paper is to present a general theory for the efficient computation of equilibrium states
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