Electronic Healthcare. Second International ICST Conference, eHealth 2009, Istanbul, Turkey, September 23-15, 2009, Revised Selected Papers

Research Article

Transparency and Documentation in Simulations of Infectious Disease Outbreaks: Towards Evidence-Based Public Health Decisions and Communications

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  • @INPROCEEDINGS{10.1007/978-3-642-11745-9_6,
        author={Joakim Ekberg and Toomas Timpka and Magnus Morin and Johan Jenvald and James Nyce and Elin Gursky and Henrik Eriksson},
        title={Transparency and Documentation in Simulations of Infectious Disease Outbreaks: Towards Evidence-Based Public Health Decisions and Communications},
        proceedings={Electronic Healthcare. Second International ICST Conference, eHealth 2009, Istanbul, Turkey, September 23-15, 2009, Revised Selected Papers},
        proceedings_a={E-HEALTH},
        year={2012},
        month={5},
        keywords={outbreak simulation ontologies report generator},
        doi={10.1007/978-3-642-11745-9_6}
    }
    
  • Joakim Ekberg
    Toomas Timpka
    Magnus Morin
    Johan Jenvald
    James Nyce
    Elin Gursky
    Henrik Eriksson
    Year: 2012
    Transparency and Documentation in Simulations of Infectious Disease Outbreaks: Towards Evidence-Based Public Health Decisions and Communications
    E-HEALTH
    Springer
    DOI: 10.1007/978-3-642-11745-9_6
Joakim Ekberg1,*, Toomas Timpka1,*, Magnus Morin2,*, Johan Jenvald2,*, James Nyce3,*, Elin Gursky4,*, Henrik Eriksson1,*
  • 1: Linköping University
  • 2: VSL Research Labs
  • 3: Ball State University
  • 4: National Strategies Support Directorate
*Contact email: joakim.ekberg@liu.se, tti@ida.liu.se, magnus.morin@vsl.se, johan.jenvald@vsl.se, jnyce@rocketmail.com, elin.gursky@anser.org, her@ida.liu.se

Abstract

Computer simulations have emerged as important tools in the preparation for outbreaks of infectious disease. To support the collaborative planning and responding to the outbreaks, reports from simulations need to be transparent (accessible) with regard to the underlying parametric settings. This paper presents a design for generation of simulation reports where the background settings used in the simulation models are automatically visualized. We extended the ontology-management system Protégé to tag different settings into categories, and included these in report generation in parallel to the simulation outcomes. The report generator takes advantage of an XSLT specification and collects the documentation of the particular simulation settings into abridged XMLs including also summarized results. We conclude that even though inclusion of critical background settings in reports may not increase the accuracy of infectious disease simulations, it can prevent misunderstandings and less than optimal public health decisions.